Add/update all batch activity — activityAll • motus

Download or resume a download of the activityAll table in an existing Motus database. Batch activity refers to the number of hits detected during a given batch. Batches with large numbers of hits may indicate interference and thus unreliable hits.

Utilisation

activityAll(src, resume = FALSE)

Arguments

src: SQLite connection (result of tagme(XXX) or DBI::dbConnect(RSQLite::SQLite(), "XXX.motus"))
resume: Logical. Resume a download? Otherwise the table is removed and the download is started from the beginning.

Exemples


# download and access data from project 176 in sql format
# usename and password are both "motus.sample"
if (FALSE) sql.motus <- tagme(176, new = TRUE, update = TRUE)

# OR use example sql file included in `motus`
sql.motus <- tagme(176, update = FALSE, 
                   dir = system.file("extdata", package = "motus"))
  
# Get all activity
if (FALSE) sql.motus <- activityAll(sql.motus)

# Access 'activityAll' table
library(dplyr)
a <- tbl(sql.motus, "activityAll")
  
# If interrupted and you want to resume
if (FALSE) sql.motus <- activityAll(sql.motus, resume = TRUE)