motus 6.1.0
- fix bugs in
tagme()-
tagme(dir = ...)now correctly downloads projects as well as receivers and respects theskipXXXarguments -
tagme()for receivers now skips node downloads if receiver is not a SensorStation -
tagme()fails gracefully if the directory specified does not exist - Fixed
Error in as.POSIXlt.character(x, tz, ...)when starting a download
-
-
tagme(new = TRUE)now starts a download immediately - Add
srvTimeout()to specify the server timeout limit - Clean up helper functions
sunRiseSet()andtimeToSunriset()-
sunRiseSet()now required to runtimeToSunriset() - Changed function argument names for clarity
-
- Replace use of ggmap with ggspatial for creating plots with static maps.
- Clean up docs for
tagSum() - Add helper function
tagmeSample()for an in-memory connection to the sample data base for running examples - Remove any functions that rely on deprecating spatial functions
- Remove year, month, day fields from activity tables.
- Standardize names in docs and examples
- Update tests internally
- Remove placeholder for French documents (will add back in once we get translations)
motus 6.0.1
- Fix bug in
xxxRunsFilter()functions resulting in the inability to correctly return the filter id
motus 6.0.0
Potential breaking change
- Changed internal method for loading SQLite databases. Now uses standard method with
DBI::dbConnect(). Previously, users applyingDBIfunctions to databases loaded withtagme()had to use the$consub-element of the connection.$conshould no longer be used (it will result in an error).
Bug fixes
- fixed bug in
deprecateBatches()which caused an error when removing deprecated batches from receivers.
Other
- Updated internal code for logging messages
- Now use simple wrappers for
DBI::dbExecute()andDBI::dbGetQuery(), usingglue::glue_sql()to help construct statements.
motus 5.0.1
Bug fixes
- fixed bug in
deprecateBatches()which caused an error when there were no batches to deprecate. - ensure new databases are fully up-to-date (without needing to immediately update).
motus 5.0.0
New features
- New
allrunsandallrunsGPSviews for quicker first passes of the data with large datasets - New field/column
attachmentintagDepstable - New field/column
numGPSfixinactivityandactivityAlltables - New field/columns
stationNameandstationIDinrecvDepstables -
gpsAll()andactivityAll()functions allow downloading complete records of GPS points and Activity - Deprecated batches are now returned to a new table
deprecatedontagme() -
deprecateBatches()function to fetch and (optionally) remove deprecated batches from all relevant tables
Bug fixes
- fixed bug in
filterByActivity()resulting inNAprobabilities - fixed bug in
getGPS()which crashed iftshad been converted to date/time format
motus 4.0.6
Bug fixes
- fixed bug resulting in missing metadata tables, and permission errors resulting from JSON formatting
- fixed bug where
forceMetadid not force metadata download for previously downloaded tags - fixed warnings produced by
plotRouteMap()on old versions of R
motus 4.0.2
Bug fixes
- fixed rounding error in
filterByActivity()resulting in mismatchedhourBins - fixed incorrect receiver types and model assignment for CTT receivers
motus 4.0.0
Small Changes
- Add
testto metadata intagDepstable to identify test deployments (tagDeployTestinalltagsandalltagsGPSviews) - Add
ageandsexto metadata intagDepstable - For CTT SensorStation V2
- Add
lat_mean,lon_mean, andn_fixestogpstable - Add
nodets,firmware,solarVolt,solarCurrent,solarCurrentCumul,lat, andlontonodeDatatable - Add
validatedtohitstable
- Add
motus 3.0.1
Small Changes
- Receiver downloads now have similar progress messages to Project downloads
- Move GPS fields from
alltagstoalltagsGPS - New function
getGPS()adds GPS fields to data - Remove NOT NULL constraint on
motusTagIDs in ambiguous tag view
Bug fixes
- Receivers updating to the new version errored on the download start
- Allow renaming (if possible) of large databases on data updates
- Continue checking for activity/nodeData even if first batch returns 0
-
nodeDataIdis corrected tonodeDataID - Warn users with custom views if they need to be removed prior to updating
motus 3.0.0 (2019-10-16)
Big Changes
- Switch to data version 2
- Includes new CTT antennas
- Includes
nodeDataandnodeDepstables for node related data and metadata.
motus 2.0.0 (2019-08-12)
New Features
- New function
activity()adds hit activity for batches to a newactivitytable in the SQLite database. This is useful for detecting ‘noisy’ periods where hits may be unreliable. - New function
filterByActivity()allows users to create custom filters using data from theactivitytable. - Added a
NEWS.mdfile to track changes to the package - Added support for
httrfor server queries - Added
?motuspackage documentation - Added unit testing
motus 1.0.0
2017 Sep 25
- tagme() / tellme() and supporting functions are now in the motusClient package, which is automatically installed from github the first time you do
library(motus)after installing themotuspackage. If automatic installation ofmotusClientfails, you can install it directly like so:
install_github("motusWTS/motusClient")2017 Jul 28
- tagme() - for updating local copies of receiver or tag project detection databases
- tellme() - for asking how much data will need to be transferred by the corresponding tagme() call
The latest version of the data server that works with this package is now running on a new box, but its database is only populated with data from 4 (!) receivers. Raw files from other receivers will be re-run with the latest version of the tag finder and added to this database. Only those users willing to wrestle with alpha code and not actually interested in getting their data should be using this package for now.