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Download data

tagme()
Download motus tag detections to a database
tellme()
Report how much new data motus has for a tag detection database
activity()
Add/update batch activity
metadata()
Update all metadata
nodeData()
Add/update nodeData
activityAll()
Add/update all batch activity
gpsAll()
Add/update all GPS points

Cleaning

Helper functions for cleaning and preparing data

filterByActivity()
Filter alltags by activity
clarify()
Report or claim ambiguous tag detections
deprecateBatches()
Fetch and remove deprecated batches

Helper

getGPS()
Get GPS variables
getRuns()
Returns a dataframe containing runs
simSiteDet()
Create a dataframe of simultaneous detections at multiple sites
sunRiseSet()
Obtain sunrise and sunset times
timeToSunriset()
Obtain time to and from sunrise/sunset
getMotusDBSrc()
Get the src_sqlite for a receiver or tag database

Plotting

plotAllTagsCoord()
Plot all tag detections by latitude or longitude
plotAllTagsSite()
Plot all tag detections by deployment
plotDailySiteSum()
Plots number of detections and tags, daily, for a specified site
plotRouteMap()
Map of tag routes and sites coloured by id
plotSite()
Plot all tags by site
plotSiteSig()
Plot signal strength of all tags by a specified site
plotTagSig()
Plot signal strength of all detections for a specified tag by site

Summarizing

siteSum()
Summarize and plot detections of all tags by site
siteSumDaily()
Summarize daily detections of all tags by site
siteTrans()
Summarize transitions between sites for each tag
tagSum()
General summary of detections for each tag
tagSumSite()
Summarize detections of all tags by site

Filtering

Functions for creating database filters

getRunsFilters()
Get runsFilters
listRunsFilters()
Returns a dataframe of the filters stored in the local database.
createRunsFilter()
Create a new filter records that can be applied to runs
deleteRunsFilter()
Delete a filter
writeRunsFilter()
Write to the local database the probabilities associated with runs for a filter

Administration

getAccess()
Return accessible projects and receivers
motusLogout()
Forget login credentials for motus.
checkVersion()
Check database version