Function reference
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tagme()
- Download motus tag detections to a database
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tellme()
- report how much new data motus has for a tag detection database
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activity()
- Add/update batch activity
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metadata()
- Update all metadata
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nodeData()
- Add/update nodeData
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activityAll()
- Add/update all batch activity
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gpsAll()
- Add/update all GPS points
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filterByActivity()
- Filter
alltags
byactivity
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clarify()
- report on or claim ambiguous tag detections
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deprecateBatches()
- Fetch and remove deprecated batches
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getGPS()
- Get GPS variables
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getRuns()
- Returns a dataframe containing runs
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simSiteDet()
- Create a dataframe of simultaneous detections at multiple sites
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sunRiseSet()
- Obtain sunrise and sunset times
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timeToSunriset()
- Obtain time to and from sunrise/sunset for a dataframe containing POSIXct times
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sqliteToRDS()
- Export results of an sqlite query to an .rds file using limited memory (Linux, OS X; not Windows)
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getMotusDBSrc()
- Get the src_sqlite for a receiver or tag database
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plotAllTagsCoord()
- Plot all tag detections by latitude or longitude
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plotAllTagsSite()
- Plot all tag detections by deployment
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plotDailySiteSum()
- Plots number of detections and tags, daily, for a specified site
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plotRouteMap()
- Map of tag routes and sites coloured by id
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plotSite()
- Plot all tags by site
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plotSiteSig()
- Plot signal strength of all tags by a specified site
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plotTagSig()
- Plot signal strength of all detections for a specified tag by site
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siteSum()
- Summarize and plot detections of all tags by site
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siteSumDaily()
- Summarize daily detections of all tags by site
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siteTrans()
- Summarize transitions between sites for each tag
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tagSum()
- General summary of detections for each tag
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tagSumSite()
- Summarize detections of all tags by site
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getRunsFilters()
- Find runFilters
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listRunsFilters()
- Returns a dataframe of the filters stored in the local database.
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createRunsFilter()
- Create a new filter records that can be applied to runs
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deleteRunsFilter()
- Delete a filter matching a filter name (and optionally a project ID)
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writeRunsFilter()
- Write to the local database the probabilities associated with runs for a filter
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getAccess()
- Return accessible projects and receivers
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motusLogout()
- Forget login credentials for motus.
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checkVersion()
- Verifies the version of the package against the admInfo table of a motus file. Those should match if the updateMotusDb function has been properly loaded by the tagme function.